BioSimulators-COBRApy documentation

BioSimulators-COBRApy provides a BioSimulators-compliant command-line interface to the COBRApy biological simulation tool. A Docker image for this package is also available.

This command-line interface and Docker image enable users to use COBRApy to execute COMBINE/OMEX archives that describe one or more simulation experiments (in SED-ML format) of one or more models (in SBML format).

A list of the algorithms and algorithm parameters supported by COBRApy is available at BioSimulators.

A simple web application and web service for using COBRApy to execute COMBINE/OMEX archives is also available at runBioSimulations.

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